Forecasting SARS-CoV-2 Concentrations in Wastewater

A project on forecasting SARS-CoV-2 concentrations in wastewater at State College.

Data Used: NWSS Public SARS-CoV-2 Wastewater Metric Data

Provided By: National Wastewater Surveillance System

Tools Used:

  • Time Series Analysis: Statsmodel, Facebook Prophet (Forecasting at Scale)
  • Machine Learning Development and Packaging: mlflow
  • Containerization: Docker
  • Continuous Integration/ Continuous Development(CI/CD): Jenkins

Project Link

Results:

  • Data Plot: Plot of SARS-CoV-2 concentrations in wastewater across two years
  • Timeseries Decomposition: Season-Trend decomposition of the timeseries data
  • Train Test Split: Splitting the data for training and testing
  • Prophet Forecast: Prophet forecast with actual observations, changepoints and comparison with naive forecast
  • Model Components: Time series components learnt by Prophet Model